Yes of course: (arriba_env) ]$ ldd /var/anaconda3/envs/arriba_env/bin/samtools What do the above commands show for your setup? In my setup, samtools is pulled from the bioconda channel: $ conda list | grep '^samtools'Īnd the channel priority is this: $ conda config -show channels I have read that the issue can arise from having the wrong channel priority. Librt.so.1 => /lib64/librt.so.1 (0x00007fa5897ac000)Ĭan you confirm that you are using samtools from your conda environment and check whether it indeed depends on libcrypto? usr/bin/ldd: line 161: /lib/ld-linux.so.2: No such file or directory Suprisingly, the samtools that gets installed in my tests does not even depend on libcrypto: $ which samtools
If I use the following commands, everything works as expected: wget īash Miniconda3-p圓8_4.8.3-Linux-x86_64.shĮval "$(/tmp/miniconda3/bin/conda shell.bash hook)"Ĭonda install -c conda-forge -c bioconda arriba=1.2.0
This issue is all over the net, but I cannot reproduce it.
0 kommentar(er)
